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  5. AMTR_s00029p00113670

AMTR_s00029p00113670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.124

Description : RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component


Gene families : OG0002733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00113670

Target Alias Description ECC score Gene Family Method Actions
AT1G17450 No alias B-block binding subunit of TFIIIC 0.06 OrthoFinder output from all 47 species
Adi_g019438 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Aev_g13000 No alias promotor-binding component *(TFC3) of TFIIIc... 0.02 OrthoFinder output from all 47 species
Ala_g16052 No alias promotor-binding component *(TFC3) of TFIIIc... 0.05 OrthoFinder output from all 47 species
Als_g03905 No alias promotor-binding component *(TFC3) of TFIIIc... 0.02 OrthoFinder output from all 47 species
Aob_g34260 No alias promotor-binding component *(TFC3) of TFIIIc... 0.02 OrthoFinder output from all 47 species
Ceric.14G017100.1 Ceric.14G017100 promotor-binding component *(TFC3) of TFIIIc... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001428.4 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.04 OrthoFinder output from all 47 species
Cre12.g518107 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.02 OrthoFinder output from all 47 species
Dac_g16950 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Dcu_g10294 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
GSVIVT01016771001 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.05 OrthoFinder output from all 47 species
Gb_30476 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 OrthoFinder output from all 47 species
LOC_Os02g42200.1 LOC_Os02g42200 promotor-binding component TFC3 of TFIIIc transcription... 0.03 OrthoFinder output from all 47 species
Lfl_g18937 No alias promotor-binding component *(TFC3) of TFIIIc... 0.06 OrthoFinder output from all 47 species
MA_59941g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.08 OrthoFinder output from all 47 species
MA_60759g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.08 OrthoFinder output from all 47 species
Ore_g35774 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Ppi_g15417 No alias promotor-binding component *(TFC3) of TFIIIc... 0.02 OrthoFinder output from all 47 species
Sam_g24501 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Smo409587 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.05 OrthoFinder output from all 47 species
Solyc09g009800.3.1 Solyc09g009800 promotor-binding component TFC3 of TFIIIc transcription... 0.08 OrthoFinder output from all 47 species
Zm00001e015829_P001 Zm00001e015829 promotor-binding component TFC3 of TFIIIc transcription... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007309 TFIIIC_Bblock-bd 115 196
No external refs found!