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  5. AMTR_s00029p00055000

AMTR_s00029p00055000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.46

Description : Cellular respiration.tricarboxylic acid cycle.succinyl-CoA ligase dimer.alpha subunit


Gene families : OG0004750 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004750_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00055000
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT5G08300 No alias Succinyl-CoA ligase, alpha subunit 0.04 OrthoFinder output from all 47 species
AT5G23250 No alias Succinyl-CoA ligase, alpha subunit 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001138 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000254.114 No alias Cellular respiration.tricarboxylic acid... 0.01 OrthoFinder output from all 47 species
Dcu_g02806 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Dde_g00388 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Ehy_g02324 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
LOC_Os07g38970.1 LOC_Os07g38970 subunit alpha of succinyl-CoA ligase heterodimer 0.05 OrthoFinder output from all 47 species
MA_10437252g0010 No alias subunit alpha of succinyl-CoA ligase heterodimer 0.06 OrthoFinder output from all 47 species
Mp7g15650.1 No alias subunit alpha of succinyl-CoA ligase heterodimer 0.03 OrthoFinder output from all 47 species
Msp_g00475 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Nbi_g06652 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Pir_g01223 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Solyc01g007910.3.1 Solyc01g007910 subunit alpha of succinyl-CoA ligase heterodimer 0.03 OrthoFinder output from all 47 species
Tin_g08935 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e010616_P002 Zm00001e010616 subunit alpha of succinyl-CoA ligase heterodimer 0.03 OrthoFinder output from all 47 species
Zm00001e035350_P001 Zm00001e035350 subunit alpha of succinyl-CoA ligase heterodimer 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0008152 metabolic process IEA Interproscan
MF GO:0048037 obsolete cofactor binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005811 CoA_ligase 169 289
IPR003781 CoA-bd 50 116
No external refs found!