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Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.16
Description : Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana
Gene families : OG0006045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006045_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00029p00034670 | |
| Cluster | HCCA: Cluster_113 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G02860 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g06016 | No alias | stability factor *(PPR10) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g02296 | No alias | stability factor *(PPR10) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g07205 | No alias | stability factor *(PPR10) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.12G078600.1 | Ceric.12G078600 | stability factor *(PPR10) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g13980 | EMB1270 | stability factor *(PPR10) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01037880001 | No alias | Pentatricopeptide repeat-containing protein At5g02860... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_07042 | No alias | plastidial mRNA processing factor (PPR10) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_13589 | No alias | plastidial mRNA processing factor (PPR10) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os07g40120.1 | LOC_Os07g40120 | plastidial mRNA processing factor (PPR10) | 0.07 | OrthoFinder output from all 47 species | |
| MA_8893308g0010 | No alias | plastidial mRNA processing factor (PPR10) | 0.03 | OrthoFinder output from all 47 species | |
| MA_96691g0010 | No alias | plastidial mRNA processing factor (PPR10) | 0.03 | OrthoFinder output from all 47 species | |
| Mp8g08650.1 | No alias | plastidial mRNA processing factor (PPR10) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g25541 | No alias | stability factor *(PPR10) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g17870 | No alias | stability factor *(PPR10) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g13568 | No alias | stability factor *(PPR10) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g107320.3.1 | Solyc01g107320 | plastidial mRNA processing factor (PPR10) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g11381 | No alias | stability factor *(PPR10) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09448 | No alias | stability factor *(PPR10) & original description: none | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | HCCA |
| MF | GO:0000156 | phosphorelay response regulator activity | IEP | HCCA |
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | HCCA |
| MF | GO:0004673 | protein histidine kinase activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0007165 | signal transduction | IEP | HCCA |
| BP | GO:0009314 | response to radiation | IEP | HCCA |
| BP | GO:0009416 | response to light stimulus | IEP | HCCA |
| BP | GO:0009581 | detection of external stimulus | IEP | HCCA |
| BP | GO:0009582 | detection of abiotic stimulus | IEP | HCCA |
| BP | GO:0009583 | detection of light stimulus | IEP | HCCA |
| BP | GO:0009584 | detection of visible light | IEP | HCCA |
| BP | GO:0009605 | response to external stimulus | IEP | HCCA |
| BP | GO:0009628 | response to abiotic stimulus | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | HCCA |
| BP | GO:0018298 | obsolete protein-chromophore linkage | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0051606 | detection of stimulus | IEP | HCCA |
| MF | GO:0060089 | molecular transducer activity | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140299 | small molecule sensor activity | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| No external refs found! |