AMTR_s00027p00244500 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00027.150

Description : Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana

Gene families : OG0001217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00027p00244500

Target	Alias	Description	ECC score	Gene Family Method
AT2G16485	No alias	nucleic acid binding;zinc ion binding;DNA binding	0.05	OrthoFinder output from all 47 species
Adi_g026023	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g077164	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g06673	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.03	OrthoFinder output from all 47 species
Ala_g35223	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0288.g063262	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.03	OrthoFinder output from all 47 species
Ceric.03G088800.1	Ceric.03G088800	not classified & original description: pacid=50572957...	0.02	OrthoFinder output from all 47 species
Ceric.09G099900.1	Ceric.09G099900	protein factor (NERD) of non-canonical RdDM pathway &...	0.05	OrthoFinder output from all 47 species
Dcu_g02022	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.03	OrthoFinder output from all 47 species
Ehy_g05103	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.07	OrthoFinder output from all 47 species
Ehy_g26663	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024181001	No alias	Zinc finger CCCH domain-containing protein 19...	0.06	OrthoFinder output from all 47 species
Len_g13930	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.03	OrthoFinder output from all 47 species
Lfl_g35904	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_116694g0010	No alias	Zinc finger CCCH domain-containing protein 19...	0.03	OrthoFinder output from all 47 species
MA_12806g0020	No alias	protein factor (NERD) of non-canonical RdDM pathway	0.02	OrthoFinder output from all 47 species
Nbi_g14762	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.03	OrthoFinder output from all 47 species
Nbi_g34438	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.04	OrthoFinder output from all 47 species
Ore_g10283	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16785	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.05	OrthoFinder output from all 47 species
Pir_g12625	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.03	OrthoFinder output from all 47 species
Ppi_g58382	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.02	OrthoFinder output from all 47 species
Sam_g52359	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.04	OrthoFinder output from all 47 species
Solyc02g084510.3.1	Solyc02g084510	Zinc finger CCCH domain-containing protein 44...	0.03	OrthoFinder output from all 47 species
Spa_g15744	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.04	OrthoFinder output from all 47 species
Spa_g30973	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.02	OrthoFinder output from all 47 species
Tin_g09943	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.04	OrthoFinder output from all 47 species
Tin_g43997	No alias	protein factor (NERD) of non-canonical RdDM pathway &...	0.03	OrthoFinder output from all 47 species
Zm00001e000091_P002	Zm00001e000091	protein factor (NERD) of non-canonical RdDM pathway	0.02	OrthoFinder output from all 47 species
Zm00001e012555_P003	Zm00001e012555	protein factor (NERD) of non-canonical RdDM pathway	0.03	OrthoFinder output from all 47 species
Zm00001e019791_P001	Zm00001e019791	protein factor (NERD) of non-canonical RdDM pathway	0.04	OrthoFinder output from all 47 species
Zm00001e029059_P002	Zm00001e029059	protein factor (NERD) of non-canonical RdDM pathway	0.04	OrthoFinder output from all 47 species
Zm00001e039077_P001	Zm00001e039077	protein factor (NERD) of non-canonical RdDM pathway	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016570	histone modification	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004343	Plus-3_dom	600	705
IPR003121	SWIB_MDM2_domain	459	533
IPR003169	GYF	1033	1078

External Links

No external refs found!

AMTR_s00027p00244500 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation