1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00027p00087930

AMTR_s00027p00087930 (EMB2024, PGL3,...)


Aliases : EMB2024, PGL3, evm_27.TU.AmTr_v1.0_scaffold00027.27

Description : Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.6-phosphogluconolactonase


Gene families : OG0001842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001842_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00027p00087930

Target Alias Description ECC score Gene Family Method Actions
AT3G49360 PGL2 6-phosphogluconolactonase 2 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021281.39 PGL4 Carbohydrate metabolism.oxidative pentose phosphate... 0.01 OrthoFinder output from all 47 species
Zm00001e001999_P001 PGL1, Zm00001e001999 6-phosphogluconolactonase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
InterPro domains Description Start Stop
IPR006148 Glc/Gal-6P_isomerase 28 230
No external refs found!