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  5. AMTR_s00026p00153500

AMTR_s00026p00153500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00026.77

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00026p00153500
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Als_g04915 KAN, KAN1 KANADI-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g14950 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g32380 KAN4, ATS not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g48326 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
GSVIVT01019971001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 OrthoFinder output from all 47 species
GSVIVT01023401001 No alias Nutrient uptake.phosphorus assimilation.phosphate... 0.14 OrthoFinder output from all 47 species
GSVIVT01029458001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os08g06370.1 KAN2, LOC_Os08g06370 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Len_g28008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56630 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Msp_g38860 KAN2 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25413 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g05070 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g08412 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e035893_P001 Zm00001e035893 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 134 181
IPR001005 SANT/Myb 52 103
No external refs found!