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  5. AMTR_s00025p00246210

AMTR_s00025p00246210 (CSP41A,...)


Aliases : CSP41A, evm_27.TU.AmTr_v1.0_scaffold00025.394

Description : RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease


Gene families : OG0001864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00246210

Target Alias Description ECC score Gene Family Method Actions
AT1G09340 CRB, HIP1.3, CSP41B chloroplast RNA binding 0.15 OrthoFinder output from all 47 species
AT3G63140 CSP41A chloroplast stem-loop binding protein of 41 kDa 0.16 OrthoFinder output from all 47 species
Adi_g006651 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Adi_g020154 CSP41A endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Adi_g044321 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02158 CSP41A endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Aev_g03824 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g04885 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g12109 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Als_g12366 CSP41A endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Als_g45562 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g01615 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11448 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g13529 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Aop_g69969 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42964.t1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58991.t1 CSP41A, Aspi01Gene58991 endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0754.g085340 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=1-1245 0.08 OrthoFinder output from all 47 species
Azfi_s1450.g103210 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=130-1254 0.04 OrthoFinder output from all 47 species
Cba_g10854 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g10933 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.11G048000.1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description:... 0.13 OrthoFinder output from all 47 species
Ceric.26G018800.1 CSP41A, Ceric.26G018800 endoribonuclease *(CSP41) & original description:... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021720.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Cre10.g435800 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Cre10.g440050 CSP41A RNA processing.organelle machineries.ribonuclease... 0.08 OrthoFinder output from all 47 species
Dac_g08562 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g14747 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g01117 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g02729 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g02854 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.13 OrthoFinder output from all 47 species
Dde_g14746 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Ehy_g01176 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.13 OrthoFinder output from all 47 species
Ehy_g06718 CSP41A endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
GSVIVT01011082001 CSP41A RNA processing.organelle machineries.ribonuclease... 0.12 OrthoFinder output from all 47 species
GSVIVT01031272001 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.12 OrthoFinder output from all 47 species
Gb_01706 CSP41A endoribonuclease (CSP41) 0.07 OrthoFinder output from all 47 species
Gb_26565 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.11 OrthoFinder output from all 47 species
Gb_37146 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.08 OrthoFinder output from all 47 species
LOC_Os07g11110.1 CSP41A, LOC_Os07g11110 endoribonuclease (CSP41) 0.02 OrthoFinder output from all 47 species
LOC_Os12g23180.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.1 OrthoFinder output from all 47 species
Len_g03236 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Len_g13543 CSP41A endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Lfl_g01195 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g12178 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
MA_115470g0010 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.13 OrthoFinder output from all 47 species
MA_196108g0010 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.06 OrthoFinder output from all 47 species
MA_307070g0010 CSP41A endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
Mp1g11680.1 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
Mp1g11690.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g11330.1 CSP41A endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
Msp_g23904 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g36515 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Nbi_g04194 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.13 OrthoFinder output from all 47 species
Nbi_g07510 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g07930 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g19880 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g31893 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14125 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Pir_g14134 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g10254 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g01983 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g10001 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017534 CSP41A endoribonuclease *(CSP41) & original description: CDS=1450-2700 0.08 OrthoFinder output from all 47 species
Sam_g04675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11377 No alias endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19736 No alias endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g22990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo107618 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.09 OrthoFinder output from all 47 species
Smo133157 CSP41A RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Smo185868 CSP41A RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Smo228849 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Solyc06g073260.3.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.12 OrthoFinder output from all 47 species
Solyc09g065180.3.1 CSP41A, Solyc09g065180 endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
Spa_g10009 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12780 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.13 OrthoFinder output from all 47 species
Tin_g00898 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g08097 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e029297_P001 CRB, HIP1.3,... endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
Zm00001e033112_P001 CSP41A, Zm00001e033112 endoribonuclease (CSP41) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0044237 cellular metabolic process IEA Interproscan
MF GO:0050662 obsolete coenzyme binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0048037 obsolete cofactor binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 11 138
No external refs found!