AMTR_s00025p00233640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.344

No description available


Gene families : OG0002311 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002311_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00233640
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Aev_g04044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g24289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_26964 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g11050 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55527 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_31892g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_682940g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g10506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g49417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g09281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e031192_P001 Zm00001e031192 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!