Zm00001d022243 (GRMZM5G867185)


Aliases : GRMZM5G867185

Description : 27.1.1 RNA.processing.splicing Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. SC35-like splicing factor 33 (SR33)


Gene families : OG_01_0000558 (Gene family) Phylogenetic Tree(s): OG0000558_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d022243
Cluster HCCA cluster: Cluster_342

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.16 No alias 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.01 Gene family
Cre13.g586916 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.02 Gene family
GSVIVT01016562001 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.03 Gene family
LOC_Os03g24890 Os03g0363800 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.02 Gene family
LOC_Os03g25770 Os03g0374575 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.06 Gene family
LOC_Os07g43950 Os07g0633200 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.04 Gene family
MA_10428606g0010 No alias 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.02 Gene family
Zm00001d047401 GRMZM2G426229 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 39 108
No external refs found!