1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00025p00213220

AMTR_s00025p00213220 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.285

Description : RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana


Gene families : OG0003174 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003174_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00213220
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g113169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12502.t1 Aspi01Gene12502 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010495001 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Pnu_g26722 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo153690 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc05g015500.4.1 Solyc05g015500 RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 22 44
IPR001876 Znf_RanBP2 238 269
IPR001876 Znf_RanBP2 192 220
No external refs found!