AMTR_s00025p00203150 (RPL16A,...)

Aliases : RPL16A, evm_27.TU.AmTr_v1.0_scaffold00025.260

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL11 component

Gene families : OG0001936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001936_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00203150
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AT2G42740	RPL16A	ribosomal protein large subunit 16A	0.13	OrthoFinder output from all 47 species
AT3G58700	No alias	Ribosomal L5P family protein	0.14	OrthoFinder output from all 47 species
AT4G18730	RPL16B	ribosomal protein L16B	0.23	OrthoFinder output from all 47 species
AT5G45775	No alias	Ribosomal L5P family protein	0.29	OrthoFinder output from all 47 species
Adi_g004325	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Adi_g080914	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Adi_g080915	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ala_g17681	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ala_g30852	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Als_g11502	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g18409	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g39011	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g17101	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g21493	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aop_g30844	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g70327	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene56794.t1	RPL16A, Aspi01Gene56794	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0350.g066549	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Cba_g11185	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.02G112300.1	RPL16A, Ceric.02G112300	component *(uL5) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020610.38	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Cre01.g027000	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	OrthoFinder output from all 47 species
Dac_g00272	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dac_g15705	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dac_g32571	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g38919	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g08602	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Dcu_g27285	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g27669	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Dde_g25923	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01020743001	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
GSVIVT01021244001	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Gb_08546	RPL16A	component RPL11 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Gb_22357	RPL16A	component RPL11 of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os01g10820.1	RPL16A, LOC_Os01g10820	component RPL11 of LSU proteome component	0.16	OrthoFinder output from all 47 species
LOC_Os02g14059.1	RPL16A, LOC_Os02g14059	component RPL11 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os05g11710.1	RPL16A, LOC_Os05g11710	component RPL11 of LSU proteome component	0.2	OrthoFinder output from all 47 species
LOC_Os06g35730.1	RPL16A, LOC_Os06g35730	component RPL11 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Lfl_g22000	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_57785g0010	RPL16A	60S ribosomal protein L11-1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_74060g0010	RPL16A	component RPL11 of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_86694g0010	RPL16A	component RPL11 of LSU proteome component	0.22	OrthoFinder output from all 47 species
Mp2g24740.1	RPL16A	component RPL11 of LSU proteome component	0.25	OrthoFinder output from all 47 species
Mp6g18870.1	RPL16A	component RPL11 of LSU proteome component	0.22	OrthoFinder output from all 47 species
Msp_g09123	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Msp_g34305	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g00824	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pp3c2_33280V3.1	RPL16A, Pp3c2_33280	ribosomal protein L16B	0.02	OrthoFinder output from all 47 species
Pp3c5_3870V3.1	RPL16A, Pp3c5_3870	Ribosomal L5P family protein	0.08	OrthoFinder output from all 47 species
Pp3c7_20160V3.1	RPL16A, Pp3c7_20160	ribosomal protein large subunit 16A	0.19	OrthoFinder output from all 47 species
Ppi_g63573	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016923	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g17383	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Sam_g21398	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo444767	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Solyc02g086240.3.1	RPL16A, Solyc02g086240	component RPL11 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Solyc07g055230.4.1	RPL16A, Solyc07g055230	component RPL11 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Solyc10g007980.3.1	RPL16A, Solyc10g007980	component RPL11 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Solyc12g010930.2.1	RPL16A, Solyc12g010930	component RPL11 of LSU proteome component	0.24	OrthoFinder output from all 47 species
Spa_g07232	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Spa_g07233	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Spa_g22809	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Spa_g25528	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Spa_g30816	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g54041	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g02344	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Zm00001e024913_P001	RPL16A, Zm00001e024913	component RPL11 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Zm00001e026886_P003	RPL16A, Zm00001e026886	component RPL11 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Zm00001e037255_P001	RPL16A, Zm00001e037255	component RPL11 of LSU proteome component	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002132	Ribosomal_L5	9	62
IPR002132	Ribosomal_L5	66	165

External Links

No external refs found!

AMTR_s00025p00203150 (RPL16A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation