AMTR_s00025p00199560 (PBA1,...)

Aliases : PBA1, evm_27.TU.AmTr_v1.0_scaffold00025.253

Description : Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-1 component

Gene families : OG0003808 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003808_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00199560

Target	Alias	Description	ECC score	Gene Family Method
AT4G31300	PBA1	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.03	OrthoFinder output from all 47 species
Adi_g063247	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Aev_g02000	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Als_g01526	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Aop_g00255	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Ceric.24G046300.1	PBA1, Ceric.24G046300	beta-type-1 component *(PBA) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001098.5	PBA1	Protein degradation.26S proteasome.20S core...	0.06	OrthoFinder output from all 47 species
Cre06.g279000	PBA1	Protein degradation.26S proteasome.20S core...	0.08	OrthoFinder output from all 47 species
Cre12.g531100	PBA1	Protein degradation.26S proteasome.20S core...	0.08	OrthoFinder output from all 47 species
Dac_g01306	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Dcu_g34976	PBA1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01032253001	PBA1	Protein degradation.26S proteasome.20S core...	0.05	OrthoFinder output from all 47 species
LOC_Os02g53060.1	PBA1, LOC_Os02g53060	component beta type-1 of 26S proteasome	0.05	OrthoFinder output from all 47 species
Len_g14846	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Len_g14847	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Lfl_g00828	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Mp6g09980.1	PBA1	component beta type-1 of 26S proteasome	0.09	OrthoFinder output from all 47 species
Nbi_g00361	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.06	OrthoFinder output from all 47 species
Ore_g05180	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Ppi_g41753	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004858	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Sam_g45039	No alias	beta-type-1 component *(PBA) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Solyc07g016200.3.1	PBA1, Solyc07g016200	component beta type-1 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Spa_g09820	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.05	OrthoFinder output from all 47 species
Tin_g26432	PBA1	beta-type-1 component *(PBA) of 26S proteasome &...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	11	191

External Links

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AMTR_s00025p00199560 (PBA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation