AMTR_s00025p00198750 (ARF19, IAA22, ARF11,...)


Aliases : ARF19, IAA22, ARF11, evm_27.TU.AmTr_v1.0_scaffold00025.251

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00198750

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00200760 ARF4,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32730 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57848 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048848 ARF6 ARF-type transcription factor & original description: CDS=56-2815 0.02 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0697.g082598 ARF16 ARF-type transcription factor & original description: CDS=1-2376 0.06 OrthoFinder output from all 47 species
Cba_g58910 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22423 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06468 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08602 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08681 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08691 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os04g36054.1 ARF1, LOC_Os04g36054 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_122218g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
MA_85955g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g31549 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13886 ARF16 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g04517 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g17376 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002378 ARF1 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019239 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-3375 0.02 OrthoFinder output from all 47 species
Sam_g49817 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g008380.4.1 ARF9, Solyc08g008380 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc08g082630.3.1 ARF9, Solyc08g082630 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Spa_g26009 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29160 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e006577_P003 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013639_P001 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e032135_P002 ARF3, ETT, Zm00001e032135 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e041248_P001 ARF10, Zm00001e041248 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005342 organic acid transmembrane transporter activity IEP HCCA
MF GO:0005343 organic acid:sodium symporter activity IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0008508 bile acid:sodium symporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015125 bile acid transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:monoatomic cation symporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015355 secondary active monocarboxylate transmembrane transporter activity IEP HCCA
MF GO:0015370 solute:sodium symporter activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140161 monocarboxylate:sodium symporter activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 127 228
IPR003311 AUX_IAA 1048 1137
IPR010525 ARF_dom 253 336
No external refs found!