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  5. AMTR_s00025p00182570

AMTR_s00025p00182570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.221

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP3 component


Gene families : OG0003859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00182570

Target Alias Description ECC score Gene Family Method Actions
AT4G25890 No alias 60S acidic ribosomal protein family 0.17 OrthoFinder output from all 47 species
AT5G57290 No alias 60S acidic ribosomal protein family 0.17 OrthoFinder output from all 47 species
Adi_g053256 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Adi_g124944 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g10658 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g35024 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g06587 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g12760 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g41418 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aspi01Gene65687.t1 Aspi01Gene65687 component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0393.g067832 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g20552 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.24G014300.1 Ceric.24G014300 component *(RPP3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dac_g46270 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dac_g46271 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g19693 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01010910001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Gb_31564 No alias component RPP3 of LSU proteome component 0.14 OrthoFinder output from all 47 species
LOC_Os01g13080.1 LOC_Os01g13080 component RPP3 of LSU proteome component 0.07 OrthoFinder output from all 47 species
LOC_Os06g48780.1 LOC_Os06g48780 component RPP3 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Len_g49119 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Len_g58897 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g28349 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
MA_10431312g0020 No alias component RPP3 of LSU proteome component. component... 0.15 OrthoFinder output from all 47 species
Mp3g07010.1 No alias component RPP3 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Msp_g00888 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g01622 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g06464 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g06465 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g18566 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pp3c21_16160V3.1 Pp3c21_16160 60S acidic ribosomal protein family 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006166 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g24981 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Smo105823 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Solyc07g009330.4.1 Solyc07g009330 component RPP3 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Spa_g04803 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g17718 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Tin_g00251 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e013180_P001 Zm00001e013180 component RPP3 of LSU proteome component 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006414 translational elongation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!