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  5. AMTR_s00025p00175980

AMTR_s00025p00175980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.211

Description : Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00175980
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Msp_g27398 EMB2453, ATPPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s3064.g028587 EMB2453, ATPPR5 not classified & original description: CDS=1-1023 0.03 OrthoFinder output from all 47 species
Sam_g51172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 135 162
IPR002885 Pentatricopeptide_repeat 308 334
IPR002885 Pentatricopeptide_repeat 341 386
IPR002885 Pentatricopeptide_repeat 233 281
IPR002885 Pentatricopeptide_repeat 166 210
IPR002885 Pentatricopeptide_repeat 410 457
No external refs found!