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  5. AMTR_s00025p00126870

AMTR_s00025p00126870 (TLP18.3,...)


Aliases : TLP18.3, evm_27.TU.AmTr_v1.0_scaffold00025.118

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein


Gene families : OG0007030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00126870
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT1G54780 TLP18.3 thylakoid lumen 18.3 kDa protein 0.23 OrthoFinder output from all 47 species
Adi_g001945 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.21 OrthoFinder output from all 47 species
Aev_g07030 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.11 OrthoFinder output from all 47 species
Ala_g01414 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.13 OrthoFinder output from all 47 species
Als_g32115 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.08 OrthoFinder output from all 47 species
Aob_g07689 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.11 OrthoFinder output from all 47 species
Aop_g08442 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.17 OrthoFinder output from all 47 species
Aspi01Gene13421.t1 TLP18.3, Aspi01Gene13421 protein involved in PS-II assembly *(Psb32) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0054.g033664 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.08 OrthoFinder output from all 47 species
Cba_g08697 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.09 OrthoFinder output from all 47 species
Ceric.05G027600.1 TLP18.3, Ceric.05G027600 protein involved in PS-II assembly *(Psb32) & original... 0.15 OrthoFinder output from all 47 species
Cre03.g182150 TLP18.3 Photosynthesis.photophosphorylation.photosystem... 0.14 OrthoFinder output from all 47 species
Dac_g09996 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.15 OrthoFinder output from all 47 species
Dcu_g00821 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.12 OrthoFinder output from all 47 species
Dde_g19044 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.02 OrthoFinder output from all 47 species
Dde_g47338 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g06594 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.1 OrthoFinder output from all 47 species
GSVIVT01000004001 TLP18.3 Photosynthesis.photophosphorylation.photosystem... 0.13 OrthoFinder output from all 47 species
LOC_Os05g33280.1 TLP18.3, LOC_Os05g33280 Psb32 protein involved in PS-II assembly 0.2 OrthoFinder output from all 47 species
Len_g16675 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.1 OrthoFinder output from all 47 species
Lfl_g03752 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.08 OrthoFinder output from all 47 species
MA_10433010g0010 TLP18.3 Psb32 protein involved in PS-II assembly 0.14 OrthoFinder output from all 47 species
Mp8g16080.1 TLP18.3 Psb32 protein involved in PS-II assembly 0.24 OrthoFinder output from all 47 species
Msp_g03092 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.17 OrthoFinder output from all 47 species
Nbi_g17006 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.15 OrthoFinder output from all 47 species
Pir_g00411 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.15 OrthoFinder output from all 47 species
Pnu_g12645 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.1 OrthoFinder output from all 47 species
Pp3c11_19220V3.1 TLP18.3, Pp3c11_19220 thylakoid lumen 18.3 kDa protein 0.04 OrthoFinder output from all 47 species
Ppi_g17567 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.13 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007460 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.1 OrthoFinder output from all 47 species
Sam_g08275 No alias protein involved in PS-II assembly *(Psb32) & original... 0.14 OrthoFinder output from all 47 species
Smo127459 TLP18.3 Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
Solyc01g098640.3.1 TLP18.3, Solyc01g098640 Psb32 protein involved in PS-II assembly 0.19 OrthoFinder output from all 47 species
Spa_g05586 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.17 OrthoFinder output from all 47 species
Spa_g05587 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.19 OrthoFinder output from all 47 species
Tin_g07118 TLP18.3 protein involved in PS-II assembly *(Psb32) & original... 0.19 OrthoFinder output from all 47 species
Zm00001e026820_P001 TLP18.3, Zm00001e026820 Psb32 protein involved in PS-II assembly 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005960 glycine cleavage complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0048037 obsolete cofactor binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR007621 TPM_dom 120 238
No external refs found!