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  5. AMTR_s00025p00102970

AMTR_s00025p00102970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.85

Description : Solute transport.channels.OSCA calcium-permeable channel


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00102970
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Cba_g58034 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17232 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40944 No alias calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009282001 RXW8 Solute transport.channels.OSCA calcium-permeable channel 0.03 OrthoFinder output from all 47 species
MA_339268g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g13770 No alias calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20112 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Smo41460 ERD4 Solute transport.channels.OSCA calcium-permeable channel 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
MF GO:0008198 ferrous iron binding IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR003864 CSC1/OSCA1-like_7TM 321 644
No external refs found!