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  5. AMTR_s00025p00038580

AMTR_s00025p00038580 (UVH6, ATXPD,...)


Aliases : UVH6, ATXPD, evm_27.TU.AmTr_v1.0_scaffold00025.17

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.XPD-type subunit


Gene families : OG0004711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00038580

Target Alias Description ECC score Gene Family Method Actions
Aev_g29567 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Als_g13498 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Ceric.34G044700.1 UVH6, ATXPD,... component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Cre17.g706300 UVH6, ATXPD RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Ehy_g17708 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
GSVIVT01011125001 UVH6, ATXPD RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Lfl_g39949 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Nbi_g11440 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Pnu_g06913 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010643 HBB 274 418
IPR010614 DEAD_2 74 261
IPR006555 ATP-dep_Helicase_C 529 702
No external refs found!