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  5. AMTR_s00024p00248520

AMTR_s00024p00248520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.321

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp28 RNA helicase


Gene families : OG0002793 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002793_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00024p00248520

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g50090.2 LOC_Os03g50090 RNA helicase (Prp28) 0.03 OrthoFinder output from all 47 species
Pnu_g03144 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g081290.4.1 Solyc02g081290 RNA helicase (Prp28) 0.03 OrthoFinder output from all 47 species
Spa_g30637 No alias RNA helicase *(SMA1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 281 470
IPR001650 Helicase_C 538 614
No external refs found!