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  5. AMTR_s00024p00244120

AMTR_s00024p00244120 (HRT1, ATRBX1, RBX1,...)


Aliases : HRT1, ATRBX1, RBX1, ROC1, evm_27.TU.AmTr_v1.0_scaffold00024.299

Description : Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB ligase E3 activities.RUB ligase E3 protein (RBX1)


Gene families : OG0002121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00244120

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000802.11 No alias Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.02 OrthoFinder output from all 47 species
Cre12.g543450 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dcu_g49763 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g47870.1 LOC_Os02g47870 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 OrthoFinder output from all 47 species
LOC_Os03g19059.1 LOC_Os03g19059 component APC11 of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Lfl_g29347 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
Mp1g19930.1 No alias Anaphase-promoting complex subunit 11 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp4g09120.1 HRT1, ATRBX1, RBX1, ROC1 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.05 OrthoFinder output from all 47 species
Nbi_g05531 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Ore_g29650 APC11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0140.g022711 APC11 component *(APC11) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Solyc12g009120.2.1 HRT1, ATRBX1,... RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 OrthoFinder output from all 47 species
Spa_g17821 HRT1, ATRBX1, RBX1, ROC1 core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Tin_g10572 HRT1, ATRBX1, RBX1, ROC1 core component *(RBX1) of CULLIN-based E3 ubiquiTin... 0.03 OrthoFinder output from all 47 species
Zm00001e017143_P001 Zm00001e017143 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.04 OrthoFinder output from all 47 species
Zm00001e023339_P001 Zm00001e023339 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 36 113
No external refs found!