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  5. AMTR_s00024p00228870

AMTR_s00024p00228870 (GRF6, AtGRF6,...)


Aliases : GRF6, AtGRF6, evm_27.TU.AmTr_v1.0_scaffold00024.233

Description : RNA biosynthesis.transcriptional activation.GRF-GIF transcriptional complex.GRF transcription factor component


Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00228870

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257830 GRF2, AtGRF2,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 OrthoFinder output from all 47 species
AT3G13960 GRF5, AtGRF5 growth-regulating factor 5 0.03 OrthoFinder output from all 47 species
AT4G24150 AtGRF8, GRF8 growth-regulating factor 8 0.04 OrthoFinder output from all 47 species
Als_g10136 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Ceric.24G030000.1 Ceric.24G030000 not classified & original description: pacid=50629184... 0.03 OrthoFinder output from all 47 species
Ceric.36G051200.1 GRF5, AtGRF5,... component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015095001 GRF5, AtGRF5 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 OrthoFinder output from all 47 species
GSVIVT01016762001 GRF5, AtGRF5 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.07 OrthoFinder output from all 47 species
GSVIVT01019667001 AtGRF8, GRF8 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.07 OrthoFinder output from all 47 species
GSVIVT01024326001 GRF5, AtGRF5 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 OrthoFinder output from all 47 species
GSVIVT01033800001 GRF3, AtGRF3 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.08 OrthoFinder output from all 47 species
GSVIVT01038629001 AtGRF7, GRF7 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.06 OrthoFinder output from all 47 species
LOC_Os02g53690.1 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
LOC_Os11g35030.1 GRF2, AtGRF2,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
MA_111469g0010 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
MA_137877g0010 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
MA_18836g0010 GRF5, AtGRF5 component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002301 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Solyc03g082430.1.1 AtGRF7, GRF7,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Solyc07g041640.3.1 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Solyc10g083510.2.1 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
Tin_g32090 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012104_P002 GRF1, AtGRF1,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e015436_P001 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e023229_P001 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e030774_P001 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e036224_P001 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR014977 WRC_dom 8 53
No external refs found!