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  5. AMTR_s00024p00218120

AMTR_s00024p00218120 (ATRPA70A, RPA1A,...)


Aliases : ATRPA70A, RPA1A, ATRPA1A, RPA70A, evm_27.TU.AmTr_v1.0_scaffold00024.209

Description : Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA1 component


Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00218120

Target Alias Description ECC score Gene Family Method Actions
Zm00001e023770_P001 ATRPA70A, RPA1A,... component RPA1 of single-stranded-DNA binding RPA... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR013955 Rep_factor-A_C 473 624
IPR007199 Rep_factor-A_N 5 99
IPR004365 NA-bd_OB_tRNA 205 283
No external refs found!