AMTR_s00024p00193220 (CMT3,...)

Aliases : CMT3, evm_27.TU.AmTr_v1.0_scaffold00024.163

Description : Chromatin organisation.DNA methylation.RNA-independent DNA methylation.CMT DNA chromomethylase

Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00024p00193220
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT1G69770	CMT3	chromomethylase 3	0.05	OrthoFinder output from all 47 species
Adi_g014234	CMT2	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g060185	CMT3	DNA chromomethylase *(CMT) & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g089629	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aev_g11191	CMT3	DNA chromomethylase *(CMT) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07783	CMT3	DNA chromomethylase *(CMT) & original description: none	0.09	OrthoFinder output from all 47 species
Als_g09491	CMT3	DNA chromomethylase *(CMT) & original description: none	0.09	OrthoFinder output from all 47 species
Als_g30424	CMT3	DNA chromomethylase *(CMT) & original description: none	0.07	OrthoFinder output from all 47 species
Aob_g28229	CMT2	DNA chromomethylase *(CMT) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g10939	CMT3	DNA chromomethylase *(CMT) & original description: none	0.1	OrthoFinder output from all 47 species
Aspi01Gene20769.t1	CMT3, Aspi01Gene20769	DNA chromomethylase *(CMT) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene43679.t1	CMT3, Aspi01Gene43679	DNA chromomethylase *(CMT) & original description: none	0.08	OrthoFinder output from all 47 species
Azfi_s0003.g007336	CMT2	DNA chromomethylase *(CMT) & original description: CDS=1-1743	0.05	OrthoFinder output from all 47 species
Azfi_s0028.g023875	CMT3	DNA chromomethylase *(CMT) & original description: CDS=5-2743	0.05	OrthoFinder output from all 47 species
Azfi_s0099.g044024	CMT3	DNA chromomethylase *(CMT) & original description: CDS=252-2663	0.04	OrthoFinder output from all 47 species
Azfi_s0380.g067362	CMT3	DNA chromomethylase *(CMT) & original description: CDS=1-2322	0.02	OrthoFinder output from all 47 species
Cba_g10809	CMT3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.12G007000.1	CMT3, Ceric.12G007000	DNA chromomethylase *(CMT) & original description:...	0.17	OrthoFinder output from all 47 species
Ceric.34G031800.1	CMT3, Ceric.34G031800	DNA chromomethylase *(CMT) & original description:...	0.07	OrthoFinder output from all 47 species
Dac_g12073	CMT3	DNA chromomethylase *(CMT) & original description: none	0.11	OrthoFinder output from all 47 species
Dcu_g46826	CMT3	DNA chromomethylase *(CMT) & original description: none	0.16	OrthoFinder output from all 47 species
Dcu_g50047	CMT2	DNA chromomethylase *(CMT) & original description: none	0.13	OrthoFinder output from all 47 species
Ehy_g08640	CMT2	DNA chromomethylase *(CMT) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01024446001	CMT2	Chromatin organisation.DNA methylation.RNA-independent...	0.06	OrthoFinder output from all 47 species
GSVIVT01025386001	CMT3	Chromatin organisation.DNA methylation.RNA-independent...	0.18	OrthoFinder output from all 47 species
GSVIVT01033464001	CMT1, DMT4	Chromatin organisation.DNA methylation.RNA-independent...	0.15	OrthoFinder output from all 47 species
Gb_13672	CMT3	DNA chromomethylase (CMT)	0.15	OrthoFinder output from all 47 species
LOC_Os10g01570.1	CMT3, LOC_Os10g01570	DNA chromomethylase (CMT)	0.18	OrthoFinder output from all 47 species
Len_g07756	CMT3	DNA chromomethylase *(CMT) & original description: none	0.07	OrthoFinder output from all 47 species
Len_g24159	CMT3	DNA chromomethylase *(CMT) & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g16046	CMT3	DNA chromomethylase *(CMT) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18656	CMT2	DNA chromomethylase *(CMT) & original description: none	0.1	OrthoFinder output from all 47 species
MA_173651g0010	CMT3	DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa...	0.15	OrthoFinder output from all 47 species
Mp6g08650.1	CMT3	DNA chromomethylase (CMT)	0.07	OrthoFinder output from all 47 species
Msp_g14579	CMT3	DNA chromomethylase *(CMT) & original description: none	0.08	OrthoFinder output from all 47 species
Nbi_g39436	CMT3	DNA chromomethylase *(CMT) & original description: none	0.15	OrthoFinder output from all 47 species
Ppi_g62076	CMT3	DNA chromomethylase *(CMT) & original description: none	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000801	CMT3	DNA chromomethylase *(CMT) & original description: CDS=1-1581	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232	CMT3	DNA chromomethylase *(CMT) & original description: CDS=250-2766	0.08	OrthoFinder output from all 47 species
Sam_g13760	No alias	DNA chromomethylase *(CMT) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g006100.4.1	CMT3, Solyc01g006100	DNA chromomethylase (CMT)	0.12	OrthoFinder output from all 47 species
Solyc12g100330.2.1	CMT3, Solyc12g100330	DNA chromomethylase (CMT)	0.13	OrthoFinder output from all 47 species
Spa_g08555	CMT3	DNA chromomethylase *(CMT) & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g26095	CMT3	DNA chromomethylase *(CMT) & original description: none	0.09	OrthoFinder output from all 47 species
Spa_g52855	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g07640	CMT3	DNA chromomethylase *(CMT) & original description: none	0.09	OrthoFinder output from all 47 species
Tin_g10202	CMT3	DNA chromomethylase *(CMT) & original description: none	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0001882	nucleoside binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
BP	GO:0007090	obsolete regulation of S phase of mitotic cell cycle	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001025	BAH_dom	146	269
IPR023780	Chromo_domain	436	473
IPR001525	C5_MeTfrase	484	844

External Links

No external refs found!

AMTR_s00024p00193220 (CMT3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation