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Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.141
Description : Splicing factor-like protein 1 OS=Arabidopsis thaliana
Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00024p00180690 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g057109 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g087207 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g07951 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g13487 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g14038 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g07374 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g07393 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g08059 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0073.g037110 | No alias | pre-mRNA splicing factor *(SF1) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g01316 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G107100.1 | Ceric.01G107100 | pre-mRNA splicing factor *(SF1) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.21G060800.1 | Ceric.21G060800 | pre-mRNA splicing factor *(SF1) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.25G061400.1 | Ceric.25G061400 | pre-mRNA splicing factor *(SF1) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.28G060200.1 | Ceric.28G060200 | pre-mRNA splicing factor *(SF1) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001154.10 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
| Cre09.g386731 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g09594 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g23085 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g30248 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_09287 | No alias | pre-mRNA splicing factor (SF1) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_19921 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_23987 | No alias | pre-mRNA splicing factor (SF1) | 0.05 | OrthoFinder output from all 47 species | |
| Gb_41039 | No alias | pre-mRNA splicing factor (SF1) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g01070.2 | LOC_Os08g01070 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g07206 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g04206 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04920 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g29785 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_15045g0010 | No alias | pre-mRNA splicing factor (SF1) | 0.04 | OrthoFinder output from all 47 species | |
| MA_8555g0010 | No alias | no hits & (original description: none) | 0.08 | OrthoFinder output from all 47 species | |
| Mp7g15050.1 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g25454 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g04834 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g06586 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g08596 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g16656 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g20482 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g31502 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g40492 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g18388 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g07459 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g04689 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29287 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0002.g001254 | No alias | pre-mRNA splicing factor *(SF1) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g09720 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g18592 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g18658 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27159 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g006010.3.1 | Solyc01g006010 | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g25982 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g26555 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g07779 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09957 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g11604 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g45333 | No alias | pre-mRNA splicing factor *(SF1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e008383_P001 | Zm00001e008383 | pre-mRNA splicing factor (SF1) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e040741_P001 | Zm00001e040741 | pre-mRNA splicing factor (SF1) | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005665 | RNA polymerase II, core complex | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006366 | transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006887 | exocytosis | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0022406 | membrane docking | IEP | HCCA |
| CC | GO:0030880 | RNA polymerase complex | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0032940 | secretion by cell | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046903 | secretion | IEP | HCCA |
| BP | GO:0048278 | vesicle docking | IEP | HCCA |
| BP | GO:0051640 | organelle localization | IEP | HCCA |
| CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | HCCA |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | HCCA |
| BP | GO:0140352 | export from cell | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |