AMTR_s00024p00155680 (ATCNGC20, CNGC20,...)

Aliases : ATCNGC20, CNGC20, CNBT1, evm_27.TU.AmTr_v1.0_scaffold00024.111

Description : Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC-type)

Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00024p00155680
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
Ehy_g02798	ATCNGC9, CNGC9	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01015970001	ATCNGC8, CNGC8	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
GSVIVT01029407001	ATCNGC20, CNGC20, CNBT1	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
Gb_10882	No alias	Probable cyclic nucleotide-gated ion channel 20,...	0.03	OrthoFinder output from all 47 species
Len_g39137	DND2, CNGC4,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10431327g0010	DND1, ATCNGC2, CNGC2	Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Ppi_g05278	CNGC15, ATCNGC15	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Solyc06g051920.4.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0008219	cell death	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005821	Ion_trans_dom	240	510

External Links

No external refs found!