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  5. AMTR_s00024p00137930

AMTR_s00024p00137930 (MYB54, ATMYB54,...)


Aliases : MYB54, ATMYB54, evm_27.TU.AmTr_v1.0_scaffold00024.83

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00137930

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264600 AtMYB117, LOF1,... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
AT1G17950 BW52, ATMYB52, MYB52 myb domain protein 52 0.06 OrthoFinder output from all 47 species
AT1G26780 AtMYB117, LOF1, MYB117 myb domain protein 117 0.03 OrthoFinder output from all 47 species
AT1G73410 MYB54, ATMYB54 myb domain protein 54 0.03 OrthoFinder output from all 47 species
AT4G33450 ATMYB69, MYB69 myb domain protein 69 0.06 OrthoFinder output from all 47 species
AT5G67300 MYBR1, MYB44,... myb domain protein r1 0.05 OrthoFinder output from all 47 species
Adi_g020716 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
Aev_g01523 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
Aev_g03283 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
Als_g18058 MYB3R-3, AtMYB3R3 R1R2R3-MYB transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000218 AtMYB117, LOF1, MYB117 MYB class-R2R3 subgroup-21 transcription factor &... 0.03 OrthoFinder output from all 47 species
Azfi_s0145.g051658 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original... 0.06 OrthoFinder output from all 47 species
Azfi_s3609.g116385 MYB73, ATMYB73 not classified & original description: CDS=1-897 0.02 OrthoFinder output from all 47 species
Cba_g03902 MYBR1, MYB44,... MYB class-R2R3 subgroup-22/23 transcription factor &... 0.02 OrthoFinder output from all 47 species
Dcu_g43014 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.04 OrthoFinder output from all 47 species
Ehy_g17909 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010006001 BW52, ATMYB52, MYB52 RNA biosynthesis.transcriptional activation.MYB... 0.07 OrthoFinder output from all 47 species
MA_120049g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g11561 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
Msp_g25640 AtMYB117, LOF1, MYB117 MYB class-R2R3 subgroup-21 transcription factor &... 0.03 OrthoFinder output from all 47 species
Ore_g33238 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_19960V3.1 Pp3c17_19960 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c18_340V3.1 LOF2, MYB105,... myb domain protein 105 0.01 OrthoFinder output from all 47 species
Ppi_g08288 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.03 OrthoFinder output from all 47 species
Solyc03g098270.1.1 LOF2, MYB105,... no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Spa_g16125 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.04 OrthoFinder output from all 47 species
Spa_g16126 MYB56, AtMYB56 MYB class-R2R3 subgroup-21 transcription factor &... 0.03 OrthoFinder output from all 47 species
Spa_g39803 ATMYB3R5, MYB3R-5 R1R2R3-MYB transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e018391_P001 MYB54, ATMYB54,... transcription factor (MYB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!