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  5. AMTR_s00023p00088020

AMTR_s00023p00088020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00023.43

Description : Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00023p00088020
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Ala_g27483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34266.t1 Aspi01Gene34266 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0055.g033944 No alias not classified & original description: CDS=18-2474 0.03 OrthoFinder output from all 47 species
GSVIVT01032735001 No alias Protein RETICULATA-RELATED 6, chloroplastic... 0.03 OrthoFinder output from all 47 species
Nbi_g11767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo71514 No alias Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR021825 RETICULATA-related 479 663
IPR007314 Cofac_haem-bd_dom 148 373
No external refs found!