LOC_Os09g32210.1


Description : Pumilio homolog 5 OS=Arabidopsis thaliana (sp|q9ljx4|pum5_arath : 451.0)


Gene families : OG_01_0000536 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000536_tree ,
OG_02_0000342 (LandPlants) Phylogenetic Tree(s): OG_02_0000342_tree ,
OG_03_0004029 (SeedPlants) Phylogenetic Tree(s): OG_03_0004029_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g32210.1
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00181800 evm_27.TU.AmTr_v1... Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01035176001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.01 LandPlants
AMTR_s00025p00181800 evm_27.TU.AmTr_v1... Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 LandPlants
AT3G20250 PUM5, APUM5 pumilio 5 0.02 LandPlants
AT4G25880 APUM6, PUM6 pumilio 6 0.01 LandPlants
Gb_30040 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 LandPlants
Pp3c3_36740V3.1 No alias pumilio 1 0.02 LandPlants
Smo1983 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.01 LandPlants
AMTR_s00025p00181800 evm_27.TU.AmTr_v1... Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 SeedPlants
AT4G25880 APUM6, PUM6 pumilio 6 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 688 720
IPR001313 Pumilio_RNA-bd_rpt 802 821
IPR001313 Pumilio_RNA-bd_rpt 652 685
IPR001313 Pumilio_RNA-bd_rpt 835 865
IPR001313 Pumilio_RNA-bd_rpt 724 753
IPR001313 Pumilio_RNA-bd_rpt 870 901
IPR001313 Pumilio_RNA-bd_rpt 760 788
IPR001313 Pumilio_RNA-bd_rpt 913 938
No external refs found!