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  5. AMTR_s00023p00030650

AMTR_s00023p00030650 (BRCA2(V), BRCA2B,...)


Aliases : BRCA2(V), BRCA2B, ATBRCA2(V), evm_27.TU.AmTr_v1.0_scaffold00023.8

Description : DNA damage response.BRCC DNA-damage response complex.BRCA2 component


Gene families : OG0007523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007523_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00023p00030650
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT4G00020 EDA20,... BREAST CANCER 2 like 2A 0.2 OrthoFinder output from all 47 species
AT5G01630 BRCA2(V),... BRCA2-like B 0.06 OrthoFinder output from all 47 species
Azfi_s0238.g059627 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000769.41 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre13.g566900 No alias DNA damage response.BRCC DNA-damage response... 0.04 OrthoFinder output from all 47 species
GSVIVT01030280001 BRCA2(V),... DNA damage response.BRCC DNA-damage response... 0.16 OrthoFinder output from all 47 species
Gb_10450 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2) 0.14 OrthoFinder output from all 47 species
LOC_Os01g07110.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.11 OrthoFinder output from all 47 species
Len_g08331 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.04 OrthoFinder output from all 47 species
Solyc02g050200.2.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.11 OrthoFinder output from all 47 species
Solyc02g050210.2.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEA Interproscan
MF GO:0003697 single-stranded DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006302 double-strand break repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
BP GO:0007090 obsolete regulation of S phase of mitotic cell cycle IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0001882 nucleoside binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR015252 BRCA2_hlx 824 905
IPR002093 BRCA2_repeat 518 549
IPR002093 BRCA2_repeat 256 285
IPR002093 BRCA2_repeat 331 360
IPR002093 BRCA2_repeat 174 207
IPR002093 BRCA2_repeat 394 423
IPR002093 BRCA2_repeat 96 125
IPR015187 BRCA2_OB_1 909 1054
No external refs found!