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  5. AMTR_s00022p00247520

AMTR_s00022p00247520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.370

Description : Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00247520

Target Alias Description ECC score Gene Family Method Actions
Adi_g042735 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Adi_g108132 RBP45B, ATRBP45B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113480 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Als_g07576 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Als_g26859 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Als_g26974 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aop_g05997 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g03248 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g32292 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Cba_g59919 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ceric.06G020000.1 Ceric.06G020000 regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.09G041300.1 Ceric.09G041300 regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
LOC_Os03g07800.1 LOC_Os03g07800 mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
MA_29443g0010 ATRBP45C mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Mp8g07840.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Solyc03g031720.3.1 ATRBP45C, Solyc03g031720 mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Solyc10g005260.3.1 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Zm00001e009967_P001 ATRBP47C,... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Zm00001e011585_P002 ATRBP45C, Zm00001e011585 mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 140 207
IPR000504 RRM_dom 47 115
IPR000504 RRM_dom 260 324
No external refs found!