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  5. AMTR_s00022p00242510

AMTR_s00022p00242510 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.352

Description : Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00242510

Target Alias Description ECC score Gene Family Method Actions
Adi_g039955 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g102973 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aev_g02953 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04818 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g08877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17313.t1 Aspi01Gene17313 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0160.g054021 No alias not classified & original description: CDS=1-861 0.03 OrthoFinder output from all 47 species
Ceric.10G010600.1 Ceric.10G010600 not classified & original description: pacid=50613083... 0.12 OrthoFinder output from all 47 species
Cre03.g198850 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Dac_g16656 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g07970 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Dde_g23796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18068 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_20026 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.08 OrthoFinder output from all 47 species
LOC_Os08g39430.1 LOC_Os08g39430 Thylakoid lumenal 19 kDa protein, chloroplastic... 0.11 OrthoFinder output from all 47 species
Len_g31505 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g00701 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_132558g0010 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.1 OrthoFinder output from all 47 species
Mp2g02710.1 No alias Thylakoid lumenal 19 kDa protein, chloroplastic... 0.13 OrthoFinder output from all 47 species
Msp_g11612 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c4_11800V3.1 Pp3c4_11800 Mog1/PsbP/DUF1795-like photosystem II reaction center... 0.04 OrthoFinder output from all 47 species
Ppi_g23945 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Solyc01g087040.2.1 Solyc01g087040 Thylakoid lumenal 19 kDa protein, chloroplastic... 0.11 OrthoFinder output from all 47 species
Spa_g11799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16540 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00522 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e003510_P001 Zm00001e003510 Thylakoid lumenal 19 kDa protein, chloroplastic... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 189 257
No external refs found!