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  5. AMTR_s00022p00235920

AMTR_s00022p00235920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.326

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm7 component


Gene families : OG0004624 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00235920
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cba_g34262 No alias component *(LSm7) of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 58 130
No external refs found!