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  5. AMTR_s00022p00112770

AMTR_s00022p00112770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.100

Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component


Gene families : OG0006405 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006405_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00112770
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT1G76570 No alias Chlorophyll A-B binding family protein 0.03 OrthoFinder output from all 47 species
Adi_g044529 No alias component *(LHCq) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g00780 No alias component *(LHCq) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09164 No alias component *(LHCq) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20424 No alias component *(LHCq) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.10G013700.1 Ceric.10G013700 component *(LHCq) of LHC-II complex & original... 0.06 OrthoFinder output from all 47 species
Dcu_g14212 No alias component *(LHCq) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04287 No alias component *(LHCq) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.09 OrthoFinder output from all 47 species
LOC_Os09g12540.1 LOC_Os09g12540 component LHCq of LHC-II complex 0.05 OrthoFinder output from all 47 species
Lfl_g10372 No alias component *(LHCq) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09744 No alias component *(LHCq) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02997 No alias component *(LHCq) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g00398 No alias component *(LHCq) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Pnu_g08686 No alias component *(LHCq) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g02034 No alias component *(LHCq) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003763 No alias not classified & original description: CDS=1-1404 0.02 OrthoFinder output from all 47 species
Smo104804 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Tin_g39906 No alias component *(LHCq) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e033739_P001 Zm00001e033739 component LHCq of LHC-II complex 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 124 299
No external refs found!