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  5. AMTR_s00021p00235990

AMTR_s00021p00235990 (emb1703,...)


Aliases : emb1703, evm_27.TU.AmTr_v1.0_scaffold00021.238

No description available


Gene families : OG0007932 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007932_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00235990
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
Ala_g03989 emb1703 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10075 emb1703 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01027152001 emb1703 No description available 0.05 OrthoFinder output from all 47 species
Gb_15616 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_171750g0010 emb1703 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g10126 emb1703 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026696 emb1703 not classified & original description: CDS=1-1242 0.03 OrthoFinder output from all 47 species
Solyc01g096010.4.1 emb1703, Solyc01g096010 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008219 cell death IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA

No InterPro domains available for this sequence

No external refs found!