AMTR_s00021p00200760 (ARF4,...)


Aliases : ARF4, evm_27.TU.AmTr_v1.0_scaffold00021.168

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00200760

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00198750 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT1G35240 ARF20 auxin response factor 20 0.05 OrthoFinder output from all 47 species
AT1G59750 ARF1 auxin response factor 1 0.03 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Adi_g061151 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081361 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089250 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107312 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34662 ARF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33060 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08752 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g59651 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0697.g082598 ARF16 ARF-type transcription factor & original description: CDS=1-2376 0.03 OrthoFinder output from all 47 species
Azfi_s0934.g093100 ARF6 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g78264 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g16977 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09257 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12286 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15200 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20778 ARF14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22354 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_23186 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Gb_39686 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g70270.1 HSS, ARF1-BP,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g06910.1 ARF6, LOC_Os02g06910 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os07g08520.1 LOC_Os07g08520 Putative auxin response factor 20 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_10432528g0010 ARF4 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_10432580g0010 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
MA_85955g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Msp_g10591 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30357 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31517 ARF1 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g26452 ARF10 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25925 ARF16 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c1_14440V3.1 ARF6, Pp3c1_14440 auxin response factor 6 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018261 TIR5, MSG1,... not classified & original description: CDS=484-2670 0.04 OrthoFinder output from all 47 species
Sam_g04406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28812 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g008380.4.1 ARF9, Solyc08g008380 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc08g082630.3.1 ARF9, Solyc08g082630 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g20525 ARF6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 260 340
IPR003340 B3_DNA-bd 132 233
IPR003311 AUX_IAA 670 764
No external refs found!