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  5. AMTR_s00021p00147150

AMTR_s00021p00147150 (SIP1,...)


Aliases : SIP1, evm_27.TU.AmTr_v1.0_scaffold00021.100

Description : Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica


Gene families : OG0000999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000999_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00147150
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Gb_08721 SIP2, AtSIP2 Probable galactinol--sucrose galactosyltransferase 2... 0.04 OrthoFinder output from all 47 species
Gb_25106 DIN10 galactinol-sucrose galactosyltransferase 0.04 OrthoFinder output from all 47 species
LOC_Os01g07530.1 SIP1, LOC_Os01g07530 raffinose synthase 0.06 OrthoFinder output from all 47 species
LOC_Os06g07600.1 DIN10, LOC_Os06g07600 galactinol-sucrose galactosyltransferase 0.03 OrthoFinder output from all 47 species
Pnu_g33650 SIP2, AtSIP2 alkaline alpha-galactosidase *(SIP2) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR008811 Glycosyl_hydrolases_36 267 328
IPR008811 Glycosyl_hydrolases_36 7 240
No external refs found!