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  5. AMTR_s00021p00127710

AMTR_s00021p00127710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.78

Description : Protein CHUP1, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00127710

Target Alias Description ECC score Gene Family Method Actions
AT1G48280 No alias hydroxyproline-rich glycoprotein family protein 0.03 OrthoFinder output from all 47 species
Cre09.g395050 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01021189001 No alias Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01021753001 CHUP1 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_27643 CHUP1 regulatory protein (IPGA) of cortical microtubule organisation 0.03 OrthoFinder output from all 47 species
LOC_Os01g46340.1 LOC_Os01g46340 regulatory protein (IPGA) of cortical microtubule organisation 0.05 OrthoFinder output from all 47 species
LOC_Os05g49820.1 LOC_Os05g49820 regulatory protein (IPGA) of cortical microtubule organisation 0.04 OrthoFinder output from all 47 species
LOC_Os08g03560.1 CHUP1, LOC_Os08g03560 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_211108g0010 CHUP1 regulatory protein (IPGA) of cortical microtubule organisation 0.04 OrthoFinder output from all 47 species
MA_5633g0010 CHUP1 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g38296 CHUP1 motility factor *(CHUP) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12617 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g069560.3.1 CHUP1, Solyc02g069560 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e020303_P001 Zm00001e020303 regulatory protein (IPGA) of cortical microtubule organisation 0.03 OrthoFinder output from all 47 species
Zm00001e029282_P001 CHUP1, Zm00001e029282 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e032492_P004 Zm00001e032492 regulatory protein (IPGA) of cortical microtubule organisation 0.02 OrthoFinder output from all 47 species
Zm00001e038406_P001 Zm00001e038406 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!