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  5. AMTR_s00019p00254550

AMTR_s00019p00254550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.435

Description : COP1-interactive protein 1 OS=Arabidopsis thaliana


Gene families : OG0003935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00254550

Target Alias Description ECC score Gene Family Method Actions
AT1G24460 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.09 OrthoFinder output from all 47 species
AT4G31570 No alias CONTAINS InterPro DOMAIN/s: Prefoldin... 0.08 OrthoFinder output from all 47 species
Adi_g011988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g30321 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g14350 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g22595 No alias vesicle trafficking tethering factor *(TNO1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene59720.t1 Aspi01Gene59720 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.15G031700.1 Ceric.15G031700 not classified & original description: pacid=50639891... 0.05 OrthoFinder output from all 47 species
Dcu_g08332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010295001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.05 OrthoFinder output from all 47 species
GSVIVT01033178001 No alias COP1-interactive protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01033179001 No alias COP1-interactive protein 1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
Gb_07542 No alias COP1-interactive protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_40009 No alias TNO1 vesicle trafficking tethering factor 0.04 OrthoFinder output from all 47 species
LOC_Os02g05490.1 LOC_Os02g05490 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g38480.1 LOC_Os02g38480 TNO1 vesicle trafficking tethering factor 0.03 OrthoFinder output from all 47 species
Len_g22993 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07858 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431592g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10432450g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14490g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g21920.1 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Nbi_g24585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38228 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022514 No alias not classified & original description: CDS=346-8904 0.03 OrthoFinder output from all 47 species
Solyc05g014200.3.1OrthoFinder output from all 47 species Solyc05g014200 TNO1 vesicle trafficking tethering factor 0.04 OrthoFinder output from all 47 species
Solyc08g006420.3.1 Solyc08g006420 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e013662_P003 Zm00001e013662 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e015026_P001 Zm00001e015026 TNO1 vesicle trafficking tethering factor 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!