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  5. AMTR_s00019p00208640

AMTR_s00019p00208640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.251

Description : Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana


Gene families : OG0006414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006414_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00208640
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT5G10690 No alias pentatricopeptide (PPR) repeat-containing protein / CBS... 0.03 OrthoFinder output from all 47 species
Als_g01812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007615 No alias not classified & original description: CDS=350-1960 0.03 OrthoFinder output from all 47 species
Dac_g18278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35563 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g20338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20397 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pnu_g18420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020562 No alias not classified & original description: CDS=129-2003 0.04 OrthoFinder output from all 47 species
Sam_g19413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo52692 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.06 OrthoFinder output from all 47 species
Solyc08g069010.4.1 Solyc08g069010 Pentatricopeptide repeat-containing protein At5g10690... 0.02 OrthoFinder output from all 47 species
Zm00001e009851_P003 Zm00001e009851 Pentatricopeptide repeat-containing protein At5g10690... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000644 CBS_dom 527 586
IPR002885 Pentatricopeptide_repeat 358 381
IPR002885 Pentatricopeptide_repeat 280 308
IPR002885 Pentatricopeptide_repeat 89 136
IPR002885 Pentatricopeptide_repeat 200 249
No external refs found!