Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.214
Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor
Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G02380 | COL2, ATCOL2 | CONSTANS-like 2 | 0.05 | OrthoFinder output from all 47 species | |
Aev_g19063 | COL2, ATCOL2 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g13330 | ATCOL4, COL4 | floral promoter *(CONSTANS) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g17369 | ATCOL4, COL4 | floral promoter *(CONSTANS) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0006.g009656 | ATCOL4, COL4 | floral promoter *(CONSTANS) & original description: CDS=186-1232 | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g06754 | COL3, ATCOL3 | floral promoter *(CONSTANS) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g11774 | COL3, ATCOL3 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01029107001 | ATCOL5, COL5 | Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01036037001 | ATCOL4, COL4 | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g44450.1 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os08g15050.1 | ATCOL5, COL5,... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g05304 | ATCOL4, COL4 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0011.g005340 | ATCOL4, COL4 | floral promoter *(CONSTANS) & original description: CDS=210-1442 | 0.03 | OrthoFinder output from all 47 species | |
Smo185898 | ATCOL4, COL4 | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g089540.3.1 | COL2, ATCOL2,... | transcription factor (BBX-CO) | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e002319_P001 | ATCOL4, COL4,... | Transcription factor GHD7 OS=Oryza sativa subsp.... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e007691_P001 | Zm00001e007691 | transcription factor (BBX-CO) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e037706_P002 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e037873_P001 | ATCOL4, COL4,... | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e041152_P001 | ATCOL5, COL5,... | transcription factor (BBX-CO) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
CC | GO:0005622 | intracellular anatomical structure | IEA | Interproscan |
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004497 | monooxygenase activity | IEP | HCCA |
BP | GO:0005976 | polysaccharide metabolic process | IEP | HCCA |
MF | GO:0008831 | dTDP-4-dehydrorhamnose reductase activity | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
MF | GO:0010277 | chlorophyllide a oxygenase [overall] activity | IEP | HCCA |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | HCCA |
MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
MF | GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | IEP | HCCA |
BP | GO:0019725 | cellular homeostasis | IEP | HCCA |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
BP | GO:0042592 | homeostatic process | IEP | HCCA |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | HCCA |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | HCCA |
BP | GO:0045226 | extracellular polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0045454 | cell redox homeostasis | IEP | HCCA |
BP | GO:0046379 | extracellular polysaccharide metabolic process | IEP | HCCA |
MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
No external refs found! |