AMTR_s00019p00150410 (RHM1, ROL1, ATRHM1,...)

Aliases : RHM1, ROL1, ATRHM1, evm_27.TU.AmTr_v1.0_scaffold00019.138

Description : Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-rhamnose synthesis.UDP-L-rhamnose synthase

Gene families : OG0000903 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00019p00150410
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
AT1G63000	NRS/ER, UER1	nucleotide-rhamnose synthase/epimerase-reductase	0.05	OrthoFinder output from all 47 species
Aev_g13357	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g13825	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g25968	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.33G035200.1	NRS/ER, UER1,...	dTDP-rhamnose synthase *(NRS-ER) & original description:...	0.02	OrthoFinder output from all 47 species
Lfl_g05620	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10105635g0010	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase	0.05	OrthoFinder output from all 47 species
Nbi_g12352	RHM1, ROL1, ATRHM1	UDP-L-rhamnose synthase *(RHM) & original description: none	0.02	OrthoFinder output from all 47 species
Smo266803	RHM1, ROL1, ATRHM1	Carbohydrate metabolism.nucleotide sugar...	0.03	OrthoFinder output from all 47 species
Smo439393	NRS/ER, UER1	Carbohydrate metabolism.nucleotide sugar...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008831	dTDP-4-dehydrorhamnose reductase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	IEA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045226	extracellular polysaccharide biosynthetic process	IEA	Interproscan
BP	GO:0046379	extracellular polysaccharide metabolic process	None	Extended
MF	GO:0050662	obsolete coenzyme binding	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005913	dTDP_dehydrorham_reduct	398	623
IPR001509	Epimerase_deHydtase	19	261

External Links

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AMTR_s00019p00150410 (RHM1, ROL1, ATRHM1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation