AMTR_s00019p00080380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.56

Description : Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00080380

Target Alias Description ECC score Gene Family Method Actions
AT1G74400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057083 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g109057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117556 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23848 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24726 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05672 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03404 MEF22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14821.t1 CRR2, Aspi01Gene14821 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34731.t1 Aspi01Gene34731 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34785.t1 Aspi01Gene34785 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66052.t1 Aspi01Gene66052 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71401.t1 REME1, Aspi01Gene71401 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012535 No alias not classified & original description: CDS=1-2328 0.04 OrthoFinder output from all 47 species
Azfi_s0081.g038550 EMB2758 not classified & original description: CDS=1-1851 0.03 OrthoFinder output from all 47 species
Azfi_s0104.g044768 EMB2758 not classified & original description: CDS=1-1815 0.04 OrthoFinder output from all 47 species
Azfi_s0112.g045771 No alias not classified & original description: CDS=1-2433 0.02 OrthoFinder output from all 47 species
Azfi_s0349.g066478 OTP84 not classified & original description: CDS=1-2082 0.03 OrthoFinder output from all 47 species
Azfi_s0405.g068373 No alias not classified & original description: CDS=1-2967 0.04 OrthoFinder output from all 47 species
Azfi_s0808.g087728 CRR22 not classified & original description: CDS=1-2094 0.05 OrthoFinder output from all 47 species
Azfi_s0908.g092257 No alias not classified & original description: CDS=1-1875 0.05 OrthoFinder output from all 47 species
Azfi_s1835.g107332 CRR22 not classified & original description: CDS=1-2094 0.05 OrthoFinder output from all 47 species
Cba_g19898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29994 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G062600.1 Ceric.01G062600 not classified & original description: pacid=50592906... 0.04 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.06 OrthoFinder output from all 47 species
Ceric.25G002100.1 Ceric.25G002100 not classified & original description: pacid=50593112... 0.04 OrthoFinder output from all 47 species
Dac_g22525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07656 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26543 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g30253 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36052 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39512 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43307 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g48025 MEF21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g48207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05220 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g37952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036757001 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
Gb_29557 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.04 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os07g05560.1 LOC_Os07g05560 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Len_g02904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23407 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25864 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g04397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39535 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06311 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10800 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29848 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g43448 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08923 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43122 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44362 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03036 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g02465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07564 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14465 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000561 No alias not classified & original description: CDS=191-3046 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000780 No alias not classified & original description: CDS=1-3003 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003208 No alias monogalactosyldiacylglycerol lipase *(HIL1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009138 No alias component *(NRPC16/RPC34) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015358 No alias not classified & original description: CDS=223-2631 0.02 OrthoFinder output from all 47 species
Sam_g44584 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32763 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g44754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55537 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29126 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 49 76
IPR002885 Pentatricopeptide_repeat 152 175
IPR002885 Pentatricopeptide_repeat 77 106
No external refs found!