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  5. AMTR_s00019p00029790

AMTR_s00019p00029790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.9

Description : Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00029790

Target Alias Description ECC score Gene Family Method Actions
Aop_g00769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_04017 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_27741 No alias Pentatricopeptide repeat-containing protein At1g55630... 0.03 OrthoFinder output from all 47 species
Gb_31799 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os08g28180.1 LOC_Os08g28180 Pentatricopeptide repeat-containing protein At2g13420,... 0.03 OrthoFinder output from all 47 species
MA_201242g0020 No alias group-II intron mitochondrial splicing factor (MISF68) 0.04 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07862 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e036305_P001 Zm00001e036305 Pentatricopeptide repeat-containing protein At3g25210,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 102 150
IPR002885 Pentatricopeptide_repeat 36 81
IPR002885 Pentatricopeptide_repeat 242 271
IPR002885 Pentatricopeptide_repeat 1 23
No external refs found!