AMTR_s00018p00250840 (GRF5, AtGRF5,...)

Aliases : GRF5, AtGRF5, evm_27.TU.AmTr_v1.0_scaffold00018.161

Description : RNA biosynthesis.transcriptional activation.GRF-GIF transcriptional complex.GRF transcription factor component

Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00018p00250840

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene37446.t1	GRF5, AtGRF5,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene72796.t3	GRF2, AtGRF2,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Cba_g32597	GRF3, AtGRF3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009299001	GRF1, AtGRF1	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	OrthoFinder output from all 47 species
GSVIVT01024326001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
Solyc10g083510.2.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e015436_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e016029_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e023229_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e023769_P003	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.07	OrthoFinder output from all 47 species
Zm00001e030774_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e036224_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009211	pyrimidine deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	HCCA
CC	GO:0043626	PCNA complex	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
CC	GO:0044796	DNA polymerase processivity factor complex	IEP	HCCA
BP	GO:0046080	dUTP metabolic process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
CC	GO:0150005	enzyme activator complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	166	209
IPR014978	Gln-Leu-Gln_QLQ	108	143

External Links

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AMTR_s00018p00250840 (GRF5, AtGRF5,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation