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  5. AMTR_s00018p00087700

AMTR_s00018p00087700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00018.39

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec12-type guanyl-nucleotide exchange factor (GEF)


Gene families : OG0001951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00018p00087700

Target Alias Description ECC score Gene Family Method Actions
Aob_g01350 PHF1 phosphate transporter trafficking factor *(PHF1) &... 0.02 OrthoFinder output from all 47 species
Cba_g00974 STL2P, ATSEC12 phosphate transporter trafficking factor *(PHF1) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01034664001 PHF1 SEC12-like protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Nbi_g00863 No alias phosphate transporter trafficking factor *(PHF1) &... 0.04 OrthoFinder output from all 47 species
Pnu_g24726 PHF1 phosphate transporter trafficking factor *(PHF1) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005354 PHF1 phosphate transporter trafficking factor *(PHF1) &... 0.02 OrthoFinder output from all 47 species
Smo416271 No alias SEC12-like protein 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0019008 molybdopterin synthase complex IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 316 345
No external refs found!