AMTR_s00017p00223570 (PUB26,...)

Aliases : PUB26, evm_27.TU.AmTr_v1.0_scaffold00017.173

Description : U-box domain-containing protein 26 OS=Arabidopsis thaliana

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00017p00223570

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00043p00215340	PUB8, B80,...	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Aev_g02169	PUB23	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g15461	CMPG2, ATCMPG2	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g18167	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g21197	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g23185	CMPG1, ATCMPG1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g37093	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g40105	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g60936	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g61569	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g01235	PUB26	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g15330	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g04774	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g18761	PUB29, ATPUB29	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene19355.t1	PUB26, Aspi01Gene19355	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44314.t1	PUB23, Aspi01Gene44314	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44315.t1	PUB23, Aspi01Gene44315	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44316.t1	PUB23, Aspi01Gene44316	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44317.t1	PUB23, Aspi01Gene44317	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44318.t1	PUB23, Aspi01Gene44318	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44320.t1	PUB23, Aspi01Gene44320	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44321.t1	PUB23, Aspi01Gene44321	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54670.t1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z056500.1	PUB26, Ceric.1Z056500	U-Box-group-III E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Dac_g00903	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g26825	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g31575	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g14998	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01026542001	CMPG2, ATCMPG2	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_19502	PUB23	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os02g46500.1	PUB23, LOC_Os02g46500	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os02g50460.1	LOC_Os02g50460	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os03g13740.1	LOC_Os03g13740	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os04g34030.1	PUB23, LOC_Os04g34030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os04g58920.1	PUB23, LOC_Os04g58920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os06g13870.1	LOC_Os06g13870	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os12g06410.1	PUB24, LOC_Os12g06410	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g31416	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_311559g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_61761g0010	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Ore_g21647	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g42738	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo172230	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc01g007050.3.1	PUB24, Solyc01g007050	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc01g009330.1.1	PUB22, Solyc01g009330	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc04g008100.3.1	Solyc04g008100	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc04g077610.4.1	Solyc04g077610	U-box domain-containing protein 30 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc05g056500.1.1	PUB26, Solyc05g056500	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc06g074140.1.1	PUB24, Solyc06g074140	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g006030.1.1	Solyc11g006030	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g068940.1.1	PUB24, Solyc11g068940	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e006484_P001	PUB23, Zm00001e006484	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e007109_P001	PUB23, Zm00001e007109	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e022698_P001	PUB26, Zm00001e022698	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e036030_P001	Zm00001e036030	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e040292_P001	PUB8, B80, Zm00001e040292	U-box domain-containing protein 8 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	17	87

External Links

No external refs found!

AMTR_s00017p00223570 (PUB26,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation