AMTR_s00017p00206510 (GRP2B, ATGRP2B,...)

Aliases : GRP2B, ATGRP2B, ATCSP4, evm_27.TU.AmTr_v1.0_scaffold00017.126

Description : External stimuli response.temperature.Csd (cold-shock-domain) protein

Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00017p00206510
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
AT2G17870	ATCSP3, CSP3	cold shock domain protein 3	0.03	OrthoFinder output from all 47 species
Adi_g077875	No alias	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Als_g03295	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.10	No alias	Cold shock protein 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_15589	ATCSP2, GRP2, CSDP2, CSP2	RNA chaperone (CSP). mRNA chaperone (CSD)	0.03	OrthoFinder output from all 47 species
Mp1g04040.1	GRP2B, ATGRP2B, ATCSP4	RNA chaperone (CSP). mRNA chaperone (CSD)	0.03	OrthoFinder output from all 47 species
Pp3c5_7920V3.1	GRP2B, ATGRP2B,...	cold shock domain protein 1	0.01	OrthoFinder output from all 47 species
Sam_g45087	No alias	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002059	CSP_DNA-bd	8	72
IPR001878	Znf_CCHC	218	234
IPR001878	Znf_CCHC	153	169

External Links

No external refs found!

AMTR_s00017p00206510 (GRP2B, ATGRP2B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation