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  5. AMTR_s00017p00197580

AMTR_s00017p00197580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.117

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0001550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00197580

Target Alias Description ECC score Gene Family Method Actions
AT4G27240 No alias zinc finger (C2H2 type) family protein 0.05 OrthoFinder output from all 47 species
Aev_g16997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48763.t1 Aspi01Gene48763 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0305.g063895 No alias not classified & original description: CDS=1048-1284 0.03 OrthoFinder output from all 47 species
Ceric.17G019700.1 Ceric.17G019700 not classified & original description: pacid=50618170... 0.03 OrthoFinder output from all 47 species
GSVIVT01024778001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Gb_25842 No alias C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os01g57650.1 LOC_Os01g57650 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g15790.1 LOC_Os03g15790 C2H2 zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
LOC_Os04g59380.1 LOC_Os04g59380 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
MA_103943g0010 No alias C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_17724g0010 No alias C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_525155g0010 No alias C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Nbi_g13834 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018625 No alias not classified & original description: CDS=1-1434 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023140 No alias not classified & original description: CDS=905-2272 0.03 OrthoFinder output from all 47 species
Solyc02g079920.3.1 Solyc02g079920 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc07g063970.3.1 Solyc07g063970 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e008786_P002 Zm00001e008786 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!