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  5. AMTR_s00017p00179100

AMTR_s00017p00179100 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.92

Description : Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana


Gene families : OG0001514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00179100

Target Alias Description ECC score Gene Family Method Actions
AT3G58520 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from all 47 species
AT5G48040 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from all 47 species
Adi_g056854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g00927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G075200.1 RPD1, Ceric.16G075200 not classified & original description: pacid=50589258... 0.03 OrthoFinder output from all 47 species
Dcu_g01416 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g14292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033438001 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_02172 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_04492 No alias WTF9 mitochondrial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Gb_10276 No alias no description available(sp|q9zuz6|wtf9_arath : 253.0) 0.03 OrthoFinder output from all 47 species
Gb_23597 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
LOC_Os01g18880.2 LOC_Os01g18880 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os02g32540.1 LOC_Os02g32540 no description available(sp|q9zuz6|wtf9_arath : 134.0) 0.02 OrthoFinder output from all 47 species
Ppi_g53712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g105040.3.1 Solyc01g105040 no description available(sp|q9zuz6|wtf9_arath : 207.0) 0.04 OrthoFinder output from all 47 species
Solyc04g071290.4.1 Solyc04g071290 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Solyc10g079160.1.1 Solyc10g079160 WTF9 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc11g019970.3.1 Solyc11g019970 no description available(sp|q9zuz6|wtf9_arath : 243.0) 0.03 OrthoFinder output from all 47 species
Tin_g31693 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006573_P002 Zm00001e006573 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014695_P001 Zm00001e014695 no description available(sp|q9zuz6|wtf9_arath : 128.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 33 363
No external refs found!