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  5. Aev_g05804

Aev_g05804 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : component *(RNPS1) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Aev_g05804

Target Alias Description ECC score Gene Family Method Actions
Als_g12115 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aob_g29271 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aop_g10362 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.19G041100.1 RNPS1, SR45,... component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dcu_g05318 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dcu_g50604 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Dde_g10398 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
LOC_Os01g72890.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Len_g07514 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Lfl_g18973 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Mp4g11580.1 RNPS1, SR45 component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Msp_g10775 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Nbi_g08317 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pir_g15172 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ppi_g18401 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sam_g14861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26477 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc10g005590.4.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Spa_g07701 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Spa_g10767 RNPS1, SR45 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018566_P001 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 95 163
No external refs found!